Physics professor Rick Trebino of Georgia Tech has written a hilarious diatribe called "How to Publish a Scientific Comment in 1 2 3 Easy Steps". There are actually far more steps than this, and I have heard similar stories from collaborators about the ordeal of trying to get a scientific comment published to correct a major mistake in a prominent paper.
Note: This story is not for the faint of heart or the easily depressed. (Especially if you might get depressed about the current state of affairs of self-correction in science.)
(Tip of the cap to Alex Vespignani.)
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